I agree with you 100% that so-called macroevolution or the evolution of new, more complex species from more basic and simple ones is not adequate. I contend that ToE goes beyond the bounds of the scientific method and it is in this respect a faith-based religion as is Islam.
Yes, the theory is regularly used to promote many religions like Theistic Evolutionism and Atheism.
I do not disagree that the elements of ToE are at work within species to adapt to changes in their environment. For example, I work in agriculture and there are many examples of pesticides that were once highly effective in killing both weeds and insects, but are now ineffective. The extensive use of these pesticides exerted a very strong selection pressure on the existing genetic variation within those populations. The result was that those pests that survived could reproduce and spread throughout the areas previously populated by individuals of the same species that were susceptible to those pesticides. So, yes, microevolution, or changes within a species, has been documented and is an illustration of some of the principles of ToE.
That is an excellent example of where the theory has some explanatory power. One limitation is that the theory does not predict how the mechanism producing this variation works, the theory just states that such a mechanism exists.
And on pests and insects, I hope you saw the new research showing resistance from bacteria that live in thegut of the insect, at least in these cases not the insect itself:
http://the-scientist.com/2012/04/23/bacterial-insecticide-resistance/
http://www.pnas.org/content/early/2012/04/19/1200231109.abstract
The ToE sure did not predict that happening, but the one I write explains complex social systems like this where one thing cannot be explained without considering all others living with them in the same environment.
Unfortunately, many describe the theory like it includes all in biology, and believe that a better explanation than that is impossible.
My contention is that science has no business in trying to solve the mystery of how we came into existence and that efforts to put forth hypotheses and theories to explain it are woefully inadequate yet they are being taught as fact to children.
The mystery of how we came into existence is certainly one of the biggest questions of them all, and is source of much conflict. But with science beginning to make more sense according to Islamic and Christian scriptures I have reason to be hopeful for future science classrooms.
It is good that students know its basics but they also need to know its limitations. Best way to precisely know what it is a model of is to know how a Genetic Algorithm works, which is actually rather simple and can randomly try many variations of fan blades to find one that works better than another, but it’s really no big deal. I personally think GA’s are totally boring. Avida is considered one of the best for biological cells, which is here in case anyone wants to see or maybe for some reason try it on their computer, like I years ago did, then again found a GA boring:
http://myxo.css.msu.edu/papers/nature2003/Nature03_Complex.pdf
I don't believe that Creation per se should be taught in schools and that if ToE is taught as a possible theory, then Intelligent Design should also be taught as a possible explanation for the inadequacies of ToE. However, this touches upon the existence of God which is outside the realm of the Scientific Method.
You can be more much more optimistic than that MustafaMc because it is not the fault of science that some use scientific theory religiously. We all like to see evidence “go our way” and I’m a little guilty of being glad it did NOT go where the Atheism camp predicted. And I think you rather that too, even though that makes us both kinda guilty of the same thing, but we don’t need to apologize. Once a theory establishes itself in science the rules are the same for each side, therefore Atheists and all else who need the theory to remain in science need to stop complaining about another being used the same way, by us. As long as we do not exaggerate what a scientific theory is able to explain and are clear what is science and what is religion there is nothing unscientific about it at all. So yes Atheists can get away with it, but as a result all you have heard about Intelligent Design not being a scientific theory because of that is based upon information from before there was even a Theory of Intelligent Design in existence, being experimented with.
Not to brag or sound like a spammy sales pitch, but when the
Intelligence Design Lab at Planet Source Code is objectively compared to the Avida paper there is no contest as to which is most awesome for making things that come alive on the screen. I’m still happy that the authors were able to get their hard work published in such a prestigious science journal, but it is another GA not something scientific minds of all ages recognize as vital to know about for virtual-life type experiments, as I did. The real test is how well Avida would do after a similar protest against it being brought to Planet Source Code, whether it would still become an award winner in peer review from ones who know how to code in that language and know what they are useful for. If it cannot show that then it is not the kind of computer model to find such a wide-acceptance. In this case it is something students who are entering universities would more likely already know, not something they first learn there. This is much better, for a scientific theory.